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entropart (version 1.4-8)

Preprocess.MC: Preprocessing of metacommunity data

Description

Calculates summary statistics of a metacommunity

Usage

Preprocess.MC(Nsi, Wi)

Arguments

Nsi

A matrix containing abundance data, species in line, communities in column.

Wi

Normalized community weights (sum to 1).

Value

An object of class MetaCommunity. It is a list:

Nsi

A matrix containing abundance data, species in line, communities in column

Nspecies

The number of species

Ncommunities

The number of communities

Wi

Normalized community weights (sum to 1)

N

The total number of individuals

Ni

A vector containing the number of individuals of each community

Ns

A vector containing the number of individuals of each species

Psi

A matrix whose columns are the probability vectors of communities (each of them sums to 1)

Ps

A vector containing the probability vector of the metacommunity

SampleCoverage

The sample coverage of the metacommunity

SampleCoverage.communities

A vector containing the sample coverages of each community

Details

This is an internal function. It is used by MetaCommunity for real data and DivEst for simulations.