Preprocess.Tree

Calculates cuts and intervals of a phylogenetic tree and make it available both in <code><a href="/link/hclust?package=entropart&version=1.6-16" data-mini-rdoc="entropart::hclust">hclust</a></code> and "phylo" (see <code>read.tree</code>) formats.

internal

Measurement and partitioning of diversity, based on Tsallis entropy, following Marcon and Herault (2015) <doi:10.18637/jss.v067.i08>.
'entropart' provides functions to calculate alpha, beta and gamma diversity of communities, including phylogenetic and functional diversity.
Estimation-bias corrections are available.

Eric Marcon

entropart

Entropy Partitioning to Measure Diversity

Bruno Herault

Preprocess.Tree function

<dl> <dt>Tree</dt>
<dd>An object of class <code><a href="/link/hclust?package=entropart&version=1.6-16" data-mini-rdoc="entropart::hclust">hclust</a></code>, "phylo" (see <code>read.tree</code>) or <code>phylog</code>. The tree must be ultrametric.</dd></dl>

Arguments

Calculates cuts and intervals of a phylogenetic tree and make it available both in <code><a href='https://rdrr.io/r/stats/hclust.html'>hclust</a></code> and "phylo" (see <code>read.tree</code>) formats.

Preprocessing of a phylogenetic tree — Preprocess.Tree

<dl>

 <dt>Tree</dt>
<dd>An object of class <code><a href='https://rdrr.io/r/stats/hclust.html'>hclust</a></code>, "phylo" (see <code>read.tree</code>) or <code>phylog</code>. The tree must be ultrametric.</dd>

</dl>

Preprocess.Tree: Preprocessing of a phylogenetic tree

Description

Usage

Value

Arguments

Details