enviGCMS (version 0.5.7)

getcsv: Convert an list object to csv file.

Description

Convert an list object to csv file.

Usage

getcsv(list, name, mzdigit = 4, rtdigit = 1, type = "o", ...)

Arguments

list

list with data as peaks list, mz, rt and group information

name

result name for csv and/or eic file, default NULL

mzdigit

m/z digits of row names of data frame, default 4

rtdigit

retention time digits of row names of data frame, default 1

type

csv formate for furthor analysis, m means Metaboanalyst, a means xMSannotator, p means Mummichog(NA values are imputed by `getimputation`, and F test is used here to generate stats and p vlaue), o means full infomation csv (for `pmd` package), default o. mapo could output all those format files.

...

other parameters for `write.table`

Value

NULL, csv file

References

Li, S.; Park, Y.; Duraisingham, S.; Strobel, F. H.; Khan, N.; Soltow, Q. A.; Jones, D. P.; Pulendran, B. PLOS Computational Biology 2013, 9 (7), e1003123. Xia, J., Sinelnikov, I.V., Han, B., Wishart, D.S., 2015. MetaboAnalyst 3.0<U+2014>making metabolomics more meaningful. Nucl. Acids Res. 43, W251<U+2013>W257.

Examples

# NOT RUN {
data(list)
getcsv(list,name='demo')
# }