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enviGCMS (version 0.5.7)

getfeaturesanova: Get the features from anova, with p value, q value, rsd and power restriction

Description

Get the features from anova, with p value, q value, rsd and power restriction

Usage

getfeaturesanova(list, power = 0.8, pt = 0.05, qt = 0.05, n = 3,
  ng = 3, rsdcf = 100, inscf = 5, imputation = "l", index = NULL)

Arguments

list

list with data as peaks list, mz, rt and group information (more than two groups)

power

defined power

pt

p value threshold

qt

q value threshold, BH adjust

n

sample numbers in one group

ng

group numbers

rsdcf

the rsd cutoff of all peaks in all group

inscf

Log intensity cutoff for peaks across samples. If any peaks show a intensity higher than the cutoff in any samples, this peaks would not be filtered. default 5

imputation

parameters for `getimputation` function method

index

the index of peaks considered, default NULL

Value

dataframe with peaks fit the setting above