enviGCMS (version 0.5.7)

plotmrc: plot the diff scatter plot for one xcmsset objects with threshold between two groups

Description

plot the diff scatter plot for one xcmsset objects with threshold between two groups

Usage

plotmrc(list, ms = c(100, 800), inscf = 5, rsdcf = 30,
  imputation = "l", ...)

Arguments

list

list with data as peaks list, mz, rt and group information

ms

the mass range to plot the data

inscf

Log intensity cutoff for peaks across samples. If any peaks show a intensity higher than the cutoff in any samples, this peaks would not be filtered. default 5

rsdcf

the rsd cutoff of all peaks in all group

imputation

parameters for `getimputation` function method

...

parameters for `plot` function

Examples

# NOT RUN {
data(list)
plotmrc(list)
# }