enviGCMS (version 0.7.1)

getcsv: Convert an list object to csv file.

Description

Convert an list object to csv file.

Usage

getcsv(list, name, mzdigit = 4, rtdigit = 1, type = "o", target = FALSE, ...)

Value

NULL, csv file

Arguments

list

list with data as peaks list, mz, rt and group information

name

result name for csv and/or eic file, default NULL

mzdigit

m/z digits of row names of data frame, default 4

rtdigit

retention time digits of row names of data frame, default 1

type

csv format for further analysis, m means Metaboanalyst, a means xMSannotator, p means Mummichog(NA values are imputed by `getimputation`, and F test is used here to generate stats and p value), o means full information csv (for `pmd` package), default o. mapo could output all those format files.

target

logical, preserve original rowname of data or not for target data, default FALSE.

...

other parameters for `write.table`

References

Li, S.; Park, Y.; Duraisingham, S.; Strobel, F. H.; Khan, N.; Soltow, Q. A.; Jones, D. P.; Pulendran, B. PLOS Computational Biology 2013, 9 (7), e1003123. Xia, J., Sinelnikov, I.V., Han, B., Wishart, D.S., 2015. MetaboAnalyst 3.0—making metabolomics more meaningful. Nucl. Acids Res. 43, W251–W257.

Examples

if (FALSE) {
data(list)
getcsv(list,name='demo')
}