enviGCMS (version 0.7.1)

getgrouprep: Get the report for samples with biological and technique replicates in different groups

Description

Get the report for samples with biological and technique replicates in different groups

Usage

getgrouprep(
  xset,
  file = NULL,
  method = "medret",
  intensity = "into",
  rsdcf = 30,
  inscf = 1000
)

Value

dataframe with mean, standard deviation and RSD for those technique replicates & biological replicates combined with raw data in different groups if file are defaults NULL.

Arguments

xset

the xcmsset object all of samples with technique replicates

file

file name for the peaklist to MetaboAnalyst

method

parameter for groupval function

intensity

parameter for groupval function

rsdcf

rsd cutoff for peaks, default 30

inscf

intensity cutoff for peaks, default 1000