enviGCMS (version 0.7.1)

getmr: Get the mzrt profile and group information for batch correction and plot as a list directly from path with default setting

Description

Get the mzrt profile and group information for batch correction and plot as a list directly from path with default setting

Usage

getmr(
  path,
  index = FALSE,
  BPPARAM = BiocParallel::SnowParam(),
  pmethod = "hplcorbitrap",
  minfrac = 0.67,
  ...
)

Value

list with rtmz profile and group infomation

Arguments

path

the path to your data

index

the index of the files

BPPARAM

used for BiocParallel package

pmethod

parameters used for different instrumentals such as 'hplcorbitrap', 'uplcorbitrap', 'hplcqtof', 'hplchqtof', 'uplcqtof', 'uplchqtof'. The parameters were from the references

minfrac

minimum fraction of samples necessary in at least one of the sample groups for it to be a valid group, default 0.67

...

arguments for xcmsSet function

See Also

getdata,getupload, getmzrt, getdoe

Examples

if (FALSE) {
library(faahKO)
cdfpath <- system.file('cdf', package = 'faahKO')
list <- getmr(cdfpath, pmethod = ' ')
}