enviGCMS (version 0.7.1)

getupload: Get the csv files from xcmsset/XCMSnExp/list object

Description

Get the csv files from xcmsset/XCMSnExp/list object

Usage

getupload(
  xset,
  method = "medret",
  value = "into",
  name = "Peaklist",
  type = "m",
  mzdigit = 4,
  rtdigit = 1
)

Value

dataframe with data needed for Metaboanalyst/xMSannotator/pmd if your want to perform local analysis.

Arguments

xset

the xcmsset/XCMSnExp/list object which you want to submitted to Metaboanalyst

method

parameter for groupval function

value

parameter for groupval function

name

file name

type

m means Metaboanalyst, a means xMSannotator, o means full information csv

mzdigit

m/z digits of row names of data frame

rtdigit

retention time digits of row names of data frame

See Also

getdata, getmzrt

Examples

if (FALSE) {
library(faahKO)
cdfpath <- system.file('cdf', package = 'faahKO')
xset <- getdata(cdfpath, pmethod = ' ')
getupload(xset)
}