enviGCMS (version 0.7.1)

plote: plot EIC and boxplot for all peaks and return diffreport

Description

plot EIC and boxplot for all peaks and return diffreport

Usage

plote(xset, name = "test", test = "t", nonpara = "n", ...)

Value

diffreport and pdf figure for EIC and boxplot

Arguments

xset

xcmsset object

name

filebase of the sub dir

test

't' means two-sample welch t-test, 't.equalvar' means two-sample welch t-test with equal variance, 'wilcoxon' means rank sum wilcoxon test, 'f' means F-test, 'pairt' means paired t test, 'blockf' means Two-way analysis of variance, default 't'

nonpara

'y' means using nonparametric ranked data, 'n' means original data

...

other parameters for `diffreport`

Examples

if (FALSE) {
library(faahKO)
cdfpath <- system.file('cdf', package = 'faahKO')
xset <- getdata(cdfpath, pmethod = ' ')
plote(xset)
}