plotmrc

plot the diff scatter plot for peaks list with threshold between two groups

Gas/Liquid Chromatography-Mass Spectrometer(GC/LC-MS) Data Analysis for Environmental Science. This package covered topics such molecular isotope ratio, matrix effects and Short-Chain Chlorinated Paraffins analysis etc. in environmental analysis.

Miao YU

enviGCMS

GC/LC-MS Data Analysis for Environmental Science

Thanh Wang

plotmrc function

<dl><dt>list</dt>
<dd>list with data as peaks list, mz, rt and group information</dd>
<dt>ms</dt>
<dd>the mass range to plot the data</dd>
<dt>inscf</dt>
<dd>Log intensity cutoff for peaks across samples. If any peaks show a intensity higher than the cutoff in any samples, this peaks would not be filtered. default 5</dd>
<dt>rsdcf</dt>
<dd>the rsd cutoff of all peaks in all group</dd>
<dt>imputation</dt>
<dd>parameters for `getimputation` function method</dd>
<dt>...</dt>
<dd>parameters for `plot` function</dd></dl>

Arguments

plot the diff scatter plot for peaks list with threshold between two groups — plotmrc

<dl>

<dt>list</dt>
<dd>list with data as peaks list, mz, rt and group information</dd>


<dt>ms</dt>
<dd>the mass range to plot the data</dd>


<dt>inscf</dt>
<dd>Log intensity cutoff for peaks across samples. If any peaks show a intensity higher than the cutoff in any samples, this peaks would not be filtered. default 5</dd>


<dt>rsdcf</dt>
<dd>the rsd cutoff of all peaks in all group</dd>


<dt>imputation</dt>
<dd>parameters for `getimputation` function method</dd>


<dt>...</dt>
<dd>parameters for `plot` function</dd>

</dl>

plotmrc: plot the diff scatter plot for peaks list with threshold between two groups

Description

Usage

Arguments

Examples