getdoe: Generate the group level rsd and average intensity based on DoE,
Description
Generate the group level rsd and average intensity based on DoE,
Usage
getdoe(
list,
inscf = 5,
rsdcf = 100,
rsdcft = 30,
imputation = "l",
tr = FALSE,
BPPARAM = BiocParallel::bpparam()
)
Value
list with group mean, standard deviation, and relative standard deviation for all peaks, and filtered peaks index
Arguments
- list
list with data as peaks list, mz, rt and group information
- inscf
Log intensity cutoff for peaks across samples. If any peaks show a intensity higher than the cutoff in any samples, this peaks would not be filtered. default 5
- rsdcf
the rsd cutoff of all peaks in all group
- rsdcft
the rsd cutoff of all peaks in technical replicates
- imputation
parameters for `getimputation` function method
- tr
logical. TRUE means dataset with technical replicates at the base level folder
- BPPARAM
An optional BiocParallelParam instance determining the parallel back-end to be used during evaluation.