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epicontacts (version 1.1.0)

Handling, Visualisation and Analysis of Epidemiological Contacts

Description

A collection of tools for representing epidemiological contact data, composed of case line lists and contacts between cases. Also contains procedures for data handling, interactive graphics, and statistics.

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Version

Install

install.packages('epicontacts')

Monthly Downloads

730

Version

1.1.0

License

GPL (>= 2)

Maintainer

VP Nagraj

Last Published

November 21st, 2017

Functions in epicontacts (1.1.0)

as.igraph.epicontacts

Create igraph object from contact data
get_pairwise

Characterise contacts by comparing case attributes
graph3D

Interactive 3D Force-directed graph from epicontacts object
get_id

Access unique identifiers in epicontacts objects
get_clusters

Assign cluster IDs to epicontacts data
get_degree

Find node degree for epicontacts objects
plot.epicontacts

Plot epicontacts objects
make_epicontacts

Read linelist and contact data
codeawesome

Reference codes for fontawesome
thin

Thin data to retain matching linelist / contacts
transp

Color tools and palettes for epicontacts
subset_clusters_by_size

Subset clusters from epicontacts object by cluster size
subset_clusters_by_id

Subset epicontacts by case-specified clusters
print.epicontacts

Print method for epicontacts objects
print.summary_epicontacts

Print method for summary_epicontacts objects
summary.epicontacts

Summary method for epicontacts objects
vis_epicontacts

Plot epicontacts objects using visNetwork
[.epicontacts

Subset epicontacts objects based on case identifiers
subset.epicontacts

Subset an epicontact object by factors