epigrowthfit-deprecated

The functions and other objects listed here are provided only
for compatibility with older versions of epigrowthfit and
may become defunct as soon as the next release.

Maximum likelihood estimation of nonlinear mixed effects models of
epidemic growth using Template Model Builder ('TMB'). Enables
joint estimation for collections of disease incidence time series,
including time series that describe multiple epidemic waves.
Supports a set of widely used phenomenological models: exponential,
logistic, Richards (generalized logistic), subexponential,
and Gompertz. Provides methods for interrogating model objects
and several auxiliary functions, including one for computing basic
reproduction numbers from fitted values of the initial exponential
growth rate.
Preliminary versions of this software were applied
in Ma et al. (2014) <doi:10.1007/s11538-013-9918-2> and
in Earn et al. (2020) <doi:10.1073/pnas.2004904117>.

Mikael Jagan

epigrowthfit

Nonlinear Mixed Effects Models of Epidemic Growth

Ben Bolker

Jonathan Dushoff

David Earn

Junling Ma

epigrowthfit-deprecated function

Deprecated Functions in Package epigrowthfit — epigrowthfit-deprecated

Deprecated Functions in Package epigrowthfit

epigrowthfit-deprecated: Deprecated Functions in Package epigrowthfit

Description

Usage

Arguments

See Also