Learn R Programming

evian (version 2.1.0)

Evidential Analysis of Genetic Association Data

Description

Evidential regression analysis for dichotomous and quantitative outcome data. The following references described the methods in this package: Strug, L. J., Hodge, S. E., Chiang, T., Pal, D. K., Corey, P. N., & Rohde, C. (2010) . Strug, L. J., & Hodge, S. E. (2006) . Royall, R. (1997) .

Copy Link

Version

Install

install.packages('evian')

Monthly Downloads

152

Version

2.1.0

License

GPL (>= 2)

Maintainer

Jiafen Gong

Last Published

May 23rd, 2019

Functions in evian (2.1.0)

robust_forCluster

Robust adjustment function
multiLine_plot

Plot methods for multiple likelihood intervals in a genomic region.
glr_plot

Plot methods for multiple glr result in a genomic region.
getGridBound

Obtain the range of the grid where MLE will be searched at
glr

Generalized Likelihood Ratio test
subsetData

interior subsetting function
evian_linear_bim

Example map data for evian_linear_raw.
adjustModel

Genotype coding adjusement
evian

Evidential analysis for genetic data using regression models
evian_binary_bim

Example map data for evian_binary_raw.
calculateGLR

Profile likelihood calculation using regression models
densityPlot

Plot profile likelihood density for a single SNP.
calculateEvianMLE

Profile likelihood calculation using regression models
evian_binary_raw

Example dataset with a binary outcome.
evian_linear_raw

Example dataset with a quantative outcome.
expandBound

A recursive function that expands the grid search for MLE.