Package: |
exomePeak |
Type: |
Package |
Version: |
1.9.1 |
Date: |
2015-06-25 |
License: |
GPL-2 |
For peak calling or general purpose: Meng, Jia, Xiaodong Cui, Manjeet K. Rao, Yidong Chen, and Yufei Huang. "Exome-based analysis for RNA epigenome sequencing data." Bioinformatics 29, no. 12 (2013): 1565-1567.
For differential analysis with rhtest: Meng, Jia, Zhiliang Lu, Hui Liu, Lin Zhang, Shaowu Zhang, Yidong Chen, Manjeet K. Rao, and Yufei Huang. "A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package." Methods 69, no. 3 (2014): 274-281.
For combinatorial RNA methylome with RMT: Liu, Lian, Shao-Wu Zhang, Yu-Chen Zhang, Hui Liu, Lin Zhang, Runsheng Chen, Yufei Huang, and Jia Meng. "Decomposition of RNA methylome reveals co-methylation patterns induced by latent enzymatic regulators of the epitranscriptome." Molecular BioSystems 11, no. 1 (2015): 262-274.
# For usage, please check the main function with:
?exomepeak
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