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exp2flux : convert gene EXPression data to FBA FLUXes

The exp2flux package was designed as a tool to convert EXPression data to FBA FLUXes. Install:

This package required R version 2.10 or higher. If you are using an older version of R you will be prompted to upgrade when you try to install the package.

For install the latest stable version this package directly from GitHub:

# Install 'devtools' R package
install.packages("devtools")

# Install 'minval' package
devtools::install_github("gibbslab/exp2flux")
library("exp2flux")

Available functions:

FunctionDescription
exp2fluxConvert Gene Expression Data to FBA fluxes
fluxDifferencesReport the fold change of fluxes between two models

Citation

Daniel Osorio, Kelly Botero, Janneth Gonzalez and Andres Pinzon-Velasco (2016). exp2flux: convert EXPression data to FBA FLUXes. R package version 0.1.

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Version

Install

install.packages('exp2flux')

Monthly Downloads

15

Version

0.1

License

GPL-2

Maintainer

Last Published

October 11th, 2016

Functions in exp2flux (0.1)

exp2flux

Convert gene expression data to FBA fluxes
plotDifferences

Plot the fold change of fluxes between two models into a bipartite graph.
fluxDifferences

Report the fold change of fluxes between two models