fanovaGraph (version 1.5)

plotDeltaJumps: Delta Jump Plot

Description

Threshold discision plot. plotDeltaJumps plots the threshold steps (the values of delta at which the graph changes) equidistant against the number of cliques and the values of delta on the real axis. The indices are assumed to be scaled for the threshold cuts.

Usage

plotDeltaJumps(graphlist, interval = c(0, 1), mean.clique.size = FALSE)

Arguments

graphlist

an object of class graphlist as obtained from estimateGraph

interval

an optional vector of size 2, range for the values of delta to be shown in the plot, defaults to c(0,1)

mean.clique.size

logical, if TRUE (default) an additional line is drawn representing the mean of the number of vertices in the cliques

Details

The plots shall give help in the choice for the treshold. In the first plot a small number of cliques might be preferable in order to have less parameters to estimate. If several values result in the same number of cliques the ones with higher mean clique size are possibly preferable.

In the second plot a high jump indicates a point of big distance between two successive edge indices and thus a clear change in the graph structure. The intervals with notable jumps are highlighted in green, the higher the jump the darker the colour. Those highlighted intervals together with a small number of cliques are probably good choices for the threshold.

Use plotGraphChange to visualize the graph structure for possible threshold values.

See Also

thresholdIdentification, plotGraphChange

Examples

# NOT RUN {
tii <- matrix(c(0.0018, 0.0265, 0.0017, 0.0277, 0.0018, 0.001, 0.028, 0.0013, 
  0.0212, 0.002, 0.0372, 0.0024, 0.0022, 0.0157, 0.003))
g <- list(d = 6, 
tii = tii,
i1 = matrix(c(0.0901, 0.1288, 0.0683, 0.0979, 0.0882, 0.1572)),
V = 0.8,
tii.scaled = tii/0.8,
cliques = list(1:6))

### Delta Jump Plot (jump between 0.0038 and 0.0196)
plotDeltaJumps(g)


# }