Pheno

FUSION1

FUSION2

Phenotype and genotype data from the Finland United States Investigation of
NIDDM (type 2) Diabetes (FUSION) study.

datasets

Data sets and utilities to accompany the second edition of
"Foundations and Applications of Statistics: an Introduction
using R" (R Pruim, published by AMS, 2017), a text covering
topics from probability and mathematical statistics at an advanced
undergraduate level.  R is integrated throughout, and access to all
the R code in the book is provided via the snippet() function.

Randall Pruim

fastR2

Foundations and Applications of Statistics Using R (2nd Edition)

Pheno function

Data frames with the following variables.<dl>
<dt>id</dt>
<dd>subject ID number for matching between data sets</dd><dt>t2d</dt>
<dd>a factor with levels <code>case</code> <code>control</code></dd><dt>bmi</dt>
<dd>body mass index</dd>
 
<dt>sex</dt>
<dd>a factor with levels
<code>F</code> <code>M</code></dd>
 
<dt>age</dt>
<dd>age of subject at time phenotypes were
colelcted</dd>
 
<dt>smoker</dt>
<dd>a factor with levels <code>former</code>
<code>never</code> <code>occasional</code> <code>regular</code></dd>
 
<dt>chol</dt>
<dd>total cholesterol</dd>
 
<dt>waist</dt>
<dd>waist circumference (cm)</dd><dt>weight</dt>
<dd>weight (kg)</dd>
 
<dt>height</dt>
<dd>height (cm)</dd><dt>whr</dt>
<dd>waist hip ratio</dd>
 
<dt>sbp</dt>
<dd>systolic blood pressure</dd>
 
<dt>dbp</dt>
<dd>diastolic blood pressure</dd><dt>marker</dt>
<dd>RS name of SNP</dd>
 
<dt>markerID</dt>
<dd>numeric ID for SNP</dd>
 
<dt>allele1</dt>
<dd>first allele coded as 1 = A, 2 = C, 3 = G, 4 = T</dd><dt>allele2</dt>
<dd>second allele coded as 1 = A, 2 = C, 3 = G, 4 = T</dd><dt>genotype</dt>
<dd>both alleles coded as a factor</dd><dt>Adose</dt>
<dd>number of A alleles</dd>
 
<dt>Cdose</dt>
<dd>number of C alleles</dd>
 
<dt>Gdose</dt>
<dd>number of G alleles</dd><dt>Tdose</dt>
<dd>number of T alleles</dd>
 
</dl>

Format

FUSION type 2 diabetes study — Pheno

Data frames with the following variables.<dl>
<dt>id</dt>
<dd>subject ID number for matching between data sets</dd>

<dt>t2d</dt>
<dd>a factor with levels <code>case</code> <code>control</code></dd>

<dt>bmi</dt>
<dd>body mass index</dd>
 
<dt>sex</dt>
<dd>a factor with levels
<code>F</code> <code>M</code></dd>
 
<dt>age</dt>
<dd>age of subject at time phenotypes were
colelcted</dd>
 
<dt>smoker</dt>
<dd>a factor with levels <code>former</code>
<code>never</code> <code>occasional</code> <code>regular</code></dd>
 
<dt>chol</dt>
<dd>total cholesterol</dd>
 
<dt>waist</dt>
<dd>waist circumference (cm)</dd>

<dt>weight</dt>
<dd>weight (kg)</dd>
 
<dt>height</dt>
<dd>height (cm)</dd>

<dt>whr</dt>
<dd>waist hip ratio</dd>
 
<dt>sbp</dt>
<dd>systolic blood pressure</dd>
 
<dt>dbp</dt>
<dd>diastolic blood pressure</dd>

<dt>marker</dt>
<dd>RS name of SNP</dd>
 
<dt>markerID</dt>
<dd>numeric ID for SNP</dd>
 
<dt>allele1</dt>
<dd>first allele coded as 1 = A, 2 = C, 3 = G, 4 = T</dd>

<dt>allele2</dt>
<dd>second allele coded as 1 = A, 2 = C, 3 = G, 4 = T</dd>

<dt>genotype</dt>
<dd>both alleles coded as a factor</dd>

<dt>Adose</dt>
<dd>number of A alleles</dd>
 
<dt>Cdose</dt>
<dd>number of C alleles</dd>
 
<dt>Gdose</dt>
<dd>number of G alleles</dd>

<dt>Tdose</dt>
<dd>number of T alleles</dd>
 
</dl>

Pheno: FUSION type 2 diabetes study

Description

Arguments

Format

Examples