expanded_to_reactiontbl

A list of data frames:<ul>
<li><code>rxns</code>, which has one row per reaction,</li>
<li><code>mets</code>, which has one row for each metabolite, and</li>
<li><code>stoich</code>, which has one row for each time a metabolite appears in a reaction.</li>
</ul>

expanded

Useful for saving a new or edited model

A toolkit for Flux Balance Analysis and related
metabolic modeling techniques. Functions are provided for: parsing
models in tabular format, converting parsed metabolic models to input
formats for common linear programming solvers, and
evaluating and applying gene-protein-reaction mappings. In addition, there
are wrappers to parse a model, select a solver, find the metabolic fluxes,
and return the results applied to the original model. Compared to other
packages in this field, this package puts a much heavier focus on
providing reusable components that can be used in the design of new
implementation of new techniques, in particular those that involve large
parameter sweeps. For a background on the theory, see What is Flux Balance
Analysis <doi:10.1038/nbt.1614>.

Max Conway

expanded_to_reactiontbl: Convert intermediate expanded format back to a reaction table

Description

Usage

Arguments

Value