fcros (version 1.6.1)

tcnReads: Performs a total count normalization of reads

Description

Given a data table x with count reads, one column for each sample, this function adjust values in such a way they become comparable between samples. User can specify the maximum value for total count reads to be used for each sample.

Usage

tcnReads(x, maxVal=0)

Arguments

x

Data table with count reads, one column for one sample

maxVal

Target total number reads for each sample. The value 0 (default) means that the median total of samples is used: maxVal = 0

Value

This function returns a data table of the same size as input

x2

Data table of the same size as x

References

Dembele D, Analysis of high biological data using their rank values, Stat Methods Med Res, accepted for publication, 2018

Dembele D, manuscript under preparation

Examples

# NOT RUN {
#    data(fdata);
# }