flip (version 2.5.1)

flip.object-class: Class flip.object

Description

The class flip.object is the output of a call to flip, flipMix, npc, flip.adjust etc. The following are functions to extract and manipulate relevant information from a flip.object.

Usage

# S4 method for flip.object
show(object)
summary(object, ...)
# S4 method for flip.object
summary(object, star.signif = TRUE, only.p.leq = NULL, ...)
# S4 method for flip.object
dim(x)
# S4 method for flip.object
[(x, i)
# S4 method for flip.object
[[(x, i)
# S4 method for flip.object
length(x)
# S4 method for flip.object
names(x)
# S4 method for flip.object
names(x) <- value
# S4 method for flip.object
sort(x, decreasing = FALSE)
# S4 method for flip.object
hist(x, ...)
# S4 method for flip.object
plot(x, y, ...)

Arguments

object

a flip-object

...

additional arguments to be passed

star.signif

If TRUE (default), it puts stars on the significant tests

only.p.leq

Shows only tests with a p-value lower than only.p.leq. The default NULL is equivalent to set only.p.leq=1.

x

a flip.object.

i

indices specifying elements to extract or replace. Indices are numeric, character or logical vectors or empty (missing) or NULL.

value

character vector of up to the same length as x, or NULL.

decreasing

logical. Should the sort be increasing or decreasing?

y

not used.

Examples

Y=matrix(rnorm(50),10,5)
colnames(Y)=LETTERS[1:5]
Y[,1:2]=Y[,1:2] +2
res = flip(Y)
res
summary(res)
sort(res)
names(res)
length(res)
dim(res)
res=res[2:3]
res
hist(res)
plot(res)