flowMerge (version 2.20.0)

plot-methods: Methods for plotting flowMerge and flowObj classes

Description

Plots all possible two-dimensional projections of the parameters in a flowMerge or flowObj object and does not require specification of the flowFrame since a pointer to the data is stored in the object. Informative axis names are used, rather than the usual FL1/FL2/FS/SS channel names. This funciton can take most of the usual additional arguments provided to plot for the flowClust package, although some, like the axis names and the data are fixed. In order for flowMerge objects to display outliers correctly with plot (following merging), the updateU method must be called on them first.

Methods

x = "flowMerge", y = "missing"

x is a flowMerge object.

x = "flowObj", y = "missing"

x is a flowObj object.

See Also

flowClust

Examples

#data(rituximab)
#data(RituximabFlowClustFit)
#o<-flowObj(flowClust.res[[which.max(flowMerge:::BIC(flowClust.res))]],rituximab);
#m<-merge(o);
#i<-fitPiecewiseLinreg(m);
#m<-m[[i]];
#plot(m,pch=20,level=0.9);