check_fs_result

Checks the Freesurfer system command result and will
stop or warning based on whether output files exist.

Wrapper functions that interface with 'Freesurfer'
<https://surfer.nmr.mgh.harvard.edu/>, a powerful and
commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with
'Freesurfer' completely in R, where you pass R objects of class 'nifti',
implemented by package 'oro.nifti', and the function executes an 'Freesurfer'
command and returns an R object of class 'nifti' or necessary output.

John Muschelli

freesurfer

Wrapper Functions for 'Freesurfer'

Athanasia Mo Mowinckel

check_fs_result function

<dl><dt>res</dt>
<dd>(numeric) Result from system command</dd>
<dt>fe_before</dt>
<dd>(logical) did the output file exist before the command ran</dd>
<dt>fe_after</dt>
<dd>(logical) did the output file exist after the command ran</dd></dl>

Arguments

Check Freesurfer Result — check_fs_result

<dl>

<dt>res</dt>
<dd>(numeric) Result from system command</dd>


<dt>fe_before</dt>
<dd>(logical) did the output file exist before the command ran</dd>


<dt>fe_after</dt>
<dd>(logical) did the output file exist after the command ran</dd>

</dl>

check_fs_result: Check Freesurfer Result

Description

Usage

Value

Arguments