get_fs_output

<p>Finds the FSF_OUTPUT_FORMAT from system environment or 
<code>getOption("fs.outputtype")</code> for output type (nii.gz, nii, ANALYZE,etc)</p>

Wrapper functions that interface with 'Freesurfer'
<https://surfer.nmr.mgh.harvard.edu/>, a powerful and
commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with
'Freesurfer' completely in R, where you pass R objects of class 'nifti',
implemented by package 'oro.nifti', and the function executes an 'Freesurfer'
command and returns an R object of class 'nifti' or necessary output.

John Muschelli

freesurfer

get_fs_output: Determine Freesurfer output type

Description

Usage

Arguments

Value

Examples