freesurfer (version 1.6.10)

mnc2nii: Convert MNC to NIfTI

Description

This function calls mnc2nii to convert MNC files to NIfTI

Usage

mnc2nii(file, outfile = NULL)

Value

Character filename of output

Arguments

file

(character) input filename

outfile

(character) output filename

Examples

if (have_fs() && requireNamespace("oro.nifti", quietly = TRUE)) {
   img = oro.nifti::nifti(array(rnorm(5*5*5), dim = c(5,5,5)))  
   mnc = nii2mnc(img)
   img_file = mnc2nii(mnc, outfile = tempfile(fileext = ".nii"))
   neurobase::readnii(img_file, verbose = TRUE)
}