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freesurfer (version 1.6.10)

mri_watershed: Use Freesurfers MRI Watershed Algorithm

Description

This function calls mri_watershed to extract a brain from an image, usually for skull stripping.

Usage

mri_watershed(file, outfile = NULL, retimg = TRUE, opts = "", ...)

Value

Character or nifti depending on retimg

Arguments

file

(character) input filename

outfile

(character) output filename

retimg

(logical) return image of class nifti

opts

(character) additional options to mri_watershed

...

additional arguments passed to fs_cmd.

Examples

Run this code
if (FALSE) {
if (have_fs()){
    mri_watershed("/path/to/T1.nii.gz")
} 
}  

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