mri_watershed: Use Freesurfers MRI Watershed Algorithm
Description
This function calls mri_watershed
to extract a brain
from an image, usually for skull stripping.
Usage
mri_watershed(file, outfile = NULL, retimg = TRUE, opts = "", ...)
Value
Character or nifti depending on retimg
Arguments
- file
(character) input filename
- outfile
(character) output filename
- retimg
(logical) return image of class nifti
- opts
(character) additional options to mri_watershed
- ...
additional arguments passed to fs_cmd
.
Examples
Run this codeif (FALSE) {
if (have_fs()){
mri_watershed("/path/to/T1.nii.gz")
}
}
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