set_fs_subj_dir

Sets the SUBJECTS_DIR variable in the system environment or 
<code>options("fs.subj_dir" = x)</code>

Wrapper functions that interface with 'Freesurfer'
<https://surfer.nmr.mgh.harvard.edu/>, a powerful and
commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with
'Freesurfer' completely in R, where you pass R objects of class 'nifti',
implemented by package 'oro.nifti', and the function executes an 'Freesurfer'
command and returns an R object of class 'nifti' or necessary output.

John Muschelli

freesurfer

Wrapper Functions for 'Freesurfer'

Athanasia Mo Mowinckel

set_fs_subj_dir function

<dl><dt>x</dt>
<dd>path to SUBJECTS_DIR defaults to <code>file.path(fs_dir(), "subjects")</code></dd></dl>

Arguments

Set Freesurfer Subjects Directory — set_fs_subj_dir

<dl>

<dt>x</dt>
<dd>path to SUBJECTS_DIR defaults to <code>file.path(fs_dir(), "subjects")</code></dd>

</dl>

set_fs_subj_dir: Set Freesurfer Subjects Directory

Description

Usage

Value

Arguments