fslr (version 1.0)

fslmaths: FSL Maths

Description

This function calls fslmaths

Usage

fslmaths(file, outfile = NULL, retimg = FALSE, reorient = FALSE,
  intern = TRUE, opts = "", ...)

Arguments

file

(character) image to be smoothed

outfile

(character) resultant image name (optional)

retimg

(logical) return image of class nifti

reorient

(logical) If retimg, should file be reoriented when read in? Passed to readNIfTI.

intern

(logical) to be passed to system

opts

(character) operations to be passed to fslmaths

...

additional arguments passed to readNIfTI.

Value

• If retimg then object of class nifit. Otherwise, Result from system command, depends if intern is TRUE or FALSE.