flirt_apply

infile

(character) reference image to be registered to

reffile

initmat

outfile

retimg

(logical) If retimg, should file be reoriented when read in?
Passed to <code><a href="/link/readNIfTI?package=fslr&version=1.3" rd-options="" data-mini-rdoc="fslr::readNIfTI">readNIfTI</a></code>.

reorient

(logical) pass to <code><a href="/link/system?package=fslr&version=1.3" rd-options="" data-mini-rdoc="fslr::system">system</a></code>

intern

opts

(logical) print out command before running

verbose

additional arguments passed to <code><a href="/link/readNIfTI?package=fslr&version=1.3" rd-options="" data-mini-rdoc="fslr::readNIfTI">readNIfTI</a></code>.

This function applies a matrix from <code><a href="/link/flirt?package=fslr&version=1.3" rd-options="" data-mini-rdoc="fslr::flirt">flirt</a></code>
to other images

Wrapper functions that interface with FSL
    (http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used
    neuroimaging software, using system commands. The goal is to be able to
    interface with FSL completely in R, where you pass R nifti objects and the
    function executes an FSL command and returns an R nifti object if desired.

flirt_apply: Apply Warp from FLIRT

Description

Usage

Arguments

Value