fslr (version 1.3)

fslreorient2std: FSL Orient to MNI

Description

This function calls fslreorient2std

Usage

fslreorient2std(file, retimg = FALSE, reorient = FALSE, intern = TRUE,
  verbose = TRUE, ...)

Arguments

file

(character) image to be manipulated

retimg

(logical) return image of class nifti

reorient

(logical) If retimg, should file be reoriented when read in? Passed to readNIfTI.

intern

(logical) to be passed to system

verbose

(logical) print out command before running

...

additional arguments passed to readNIfTI.

Value

• If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.