fslr (version 1.3)

fslswapdim: FSL Swap Dimensions

Description

This function calls fslswapdim

Usage

fslswapdim(file, outfile = NULL, retimg = FALSE, reorient = FALSE,
  intern = TRUE, a = "x", b = "y", c = "z", verbose = TRUE, ...)

Arguments

file

(character) image to be manipulated

outfile

(character) resultant image name (optional)

retimg

(logical) return image of class nifti

reorient

(logical) If retimg, should file be reoriented when read in? Passed to readNIfTI.

intern

(logical) to be passed to system

a

(character) Option for x domain in fslswapdim

b

(character) Option for y domain in fslswapdim

c

(character) Option for z domain in fslswapdim

verbose

(logical) print out command before running

...

additional arguments passed to readNIfTI.

Value

• If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.