eddy_correct

infile

outfile

retimg

Set the volume number for the reference volume 
that will be used as a target to register all other volumes to. 
(default=0, i.e. the first volume)

reference_no

Additional arguments passed to <code><a rd-options="" href="/link/fslcmd?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::fslcmd">fslcmd</a></code>


This function calls <code>eddy_correct</code> from FSL for 
DTI Processing


Wrapper functions that interface with 'FSL' (http://
fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.

John Muschelli

fslr

Wrapper Functions for FSL ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')

eddy_correct function

Additional arguments passed to <code><a rd-options='' href='fslcmd'>fslcmd</a></code>

eddy_correct: Eddy Current Correction

Description

Usage

Arguments

Value