fast

file

(character) resultant image name (optional)

outfile

retimg

(logical) If retimg, should file be reoriented when read in?
Passed to <code><a rd-options="" href="/link/readnii?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::readnii">readnii</a></code>.

reorient

(logical) to be passed to <code><a rd-options="" href="/link/system?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::system">system</a></code>

intern

(character) operations to be passed to <code>fast</code>

opts

(character) Suffix to grab from outfile.  For 
example, output filename is <code>paste0(outfile, "_", out_type)</code>

out_type

(logical) print out command before running

verbose

additional arguments passed to <code><a rd-options="" href="/link/readnii?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::readnii">readnii</a></code>.


This function calls <code>fast</code> from FSL


Wrapper functions that interface with 'FSL' (http://
fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.

John Muschelli

fslr

Wrapper Functions for FSL ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')

fast function

(logical) If retimg, should file be reoriented when read in?
Passed to <code><a rd-options='' href='readnii'>readnii</a></code>.

(logical) to be passed to <code><a rd-options='' href='system'>system</a></code>

additional arguments passed to <code><a rd-options='' href='readnii'>readnii</a></code>.

fast: FSL FAST

Description

Usage

Arguments

Value