fsl_anat

(character) image to be manipulated, should be full path

file

modality

(character) output directory, if none specified, will 
default to <code>dirname(file)</code>

outdir

(logical) to be passed to <code><a rd-options="" href="/link/system?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::system">system</a></code>

intern

(character) operations to be passed to <code>fsl_anat</code>

opts

(logical) print out command before running

verbose

options passed to <code><a rd-options="" href="/link/checkimg?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::checkimg">checkimg</a></code>


This function calls <code>fsl_anat</code> from FSL


Wrapper functions that interface with 'FSL' (http://
fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.

John Muschelli

fslr

Wrapper Functions for FSL ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')

fsl_anat function

(logical) to be passed to <code><a rd-options='' href='system'>system</a></code>

options passed to <code><a rd-options='' href='checkimg'>checkimg</a></code>

fsl_anat: FSL Anatomical Processing Script

Description

Usage

Arguments

Value