fslr (version 1.9.2.1)

fslmaths: FSL Maths

Description

This function calls fslmaths

Usage

fslmaths(file, outfile = NULL, retimg = TRUE, reorient = FALSE, intern = FALSE, opts = "", verbose = TRUE, ...)

Arguments

file

(character) image to be manipulated

outfile

(character) resultant image name (optional)

retimg

(logical) return image of class nifti

reorient

(logical) If retimg, should file be reoriented when read in? Passed to readnii.

intern

(logical) to be passed to system

opts

(character) operations to be passed to fslmaths

verbose

(logical) print out command before running

...

additional arguments passed to readnii.

Value

If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.