fslrem

file

(character) image to divide the current image by and take remainder

file2

(character) resultant image name (optional)

outfile

retimg

(logical) If retimg, should file be reoriented 
when read in?
Passed to <code><a rd-options="" href="/link/readnii?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::readnii">readnii</a></code>.

reorient

(logical) to be passed to <code><a rd-options="" href="/link/system?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::system">system</a></code>

intern

(character) operations to be passed to <code>fslmaths</code>

opts

additional arguments passed to <code><a rd-options="" href="/link/readnii?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::readnii">readnii</a></code>.


This function calls <code>fslmaths -rem</code>.  
The R functions wraps <code>fslmaths</code>


Wrapper functions that interface with 'FSL' (http://
fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.

John Muschelli

fslr

Wrapper Functions for FSL ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')

fslrem function

(logical) If retimg, should file be reoriented 
when read in?
Passed to <code><a rd-options='' href='readnii'>readnii</a></code>.

(logical) to be passed to <code><a rd-options='' href='system'>system</a></code>

additional arguments passed to <code><a rd-options='' href='readnii'>readnii</a></code>.

fslrem: Modulus Remainder of 2 Images using FSL

Description

Usage

Arguments

Value