fslswapdim

file

(character) resultant image name (optional)

outfile

retimg

(logical) If retimg, should file be reoriented when read in?
Passed to <code><a rd-options="" href="/link/readnii?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::readnii">readnii</a></code>.

reorient

(logical) to be passed to <code><a rd-options="" href="/link/system?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::system">system</a></code>

intern

(character) Option for x domain in <code>fslswapdim</code>

(character) Option for y domain in <code>fslswapdim</code>

(character) Option for z domain in <code>fslswapdim</code>

(logical) print out command before running

verbose

additional arguments passed to <code><a rd-options="" href="/link/readnii?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::readnii">readnii</a></code>.


This function calls <code>fslswapdim</code>


Wrapper functions that interface with 'FSL' (http://
fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.

John Muschelli

fslr

Wrapper Functions for FSL ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')

fslswapdim function

(logical) If retimg, should file be reoriented when read in?
Passed to <code><a rd-options='' href='readnii'>readnii</a></code>.

(logical) to be passed to <code><a rd-options='' href='system'>system</a></code>

additional arguments passed to <code><a rd-options='' href='readnii'>readnii</a></code>.

fslswapdim: FSL Swap Dimensions

Description

Usage

Arguments

Value