ortho_diff

pred

binary manual segmentation (ground truth)

coordinate for the center of the crosshairs.

cols

levels

add legend, passed to <code><a rd-options="" href="/link/ortho2?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::ortho2">ortho2</a></code>

addlegend

run <code><a rd-options="" href="/link/xyz?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::xyz">xyz</a></code> on <code>roi</code>.  Disregarded if <code>xyz</code> is
not <code>NULL</code>

center

leg.cex

arguments to be passed to <code><a rd-options="" href="/link/ortho2?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::ortho2">ortho2</a></code>


Uses <code><a rd-options="" href="/link/ortho2?package=fslr&version=1.9.2.1" data-mini-rdoc="fslr::ortho2">ortho2</a></code> to plot differences between a predicted binary
image and the assumed ground truth (<code>roi</code>).


Wrapper functions that interface with 'FSL' (http://
fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.

John Muschelli

fslr

Wrapper Functions for FSL ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')

ortho_diff function

add legend, passed to <code><a rd-options='' href='ortho2'>ortho2</a></code>

run <code><a rd-options='' href='xyz'>xyz</a></code> on <code>roi</code>.  Disregarded if <code>xyz</code> is
not <code>NULL</code>

arguments to be passed to <code><a rd-options='' href='ortho2'>ortho2</a></code>


Uses <code><a rd-options='' href='ortho2'>ortho2</a></code> to plot differences between a predicted binary
image and the assumed ground truth (<code>roi</code>).


ortho_diff: Plot differences for Prediction and Gold Standard

Description

Usage

Arguments

See Also