A tool for applying and correcting estimated susceptibility induced distortions
applytopup(infile, datain, index, topup_files, out = NULL,
method = c("lsr", "jac"), interp = c("spline", "trilinear"),
verbose = TRUE)apply_topup(...)
fsl_applytopup(...)
list of names of input image (to be corrected)
name of text file with PE directions/times
list of indicies into --datain of the input image (to be corrected)
name of field/movements (from topup)
basename for output (warped) image
Use jacobian modulation (jac) or least-squares resampling (lsr), default=lsr.
Image interpolation model, trilinear or spline. Default spline
Print diagnostic information while running
arguments passed to topup if using fsl_topup