eddy

infile

mask

A text-file describing the acquisition parameters for the 
different images in <code>infile</code> The format of this file is identical 
to that used by topup (though the parameter is called <code>--datain</code> 
there).

acq_file

A text-file that determines the relationship between 
on the one hand the images in <code>infile</code> and on the other hand the 
acquisition parameters in <code>acq_file</code>.

index_file

A text file with normalised vectors describing 
the direction of the diffusion weighting.

bvecs

A text file with b-values describing the "amount of" 
diffusion weighting

bvals

outfile

(logical) return image of class nifti

retimg

Additional options to pass to arguments 
passed to <code><a rd-options="" href="/link/eddy?package=fslr&version=2.24.1" data-mini-rdoc="fslr::eddy">eddy</a></code>

opts

verbose

This function calls <code>eddy</code> from FSL for 
DTI Processing

Wrapper functions that interface with 'FSL'
<http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>, a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.

John Muschelli

fslr

Wrapper Functions for 'FSL' ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')

eddy function

Additional options to pass to arguments 
passed to <code><a rd-options='' href='eddy'>eddy</a></code>

eddy: Eddy Current Correction

Description

Usage

Arguments

Value