fslr (version 2.24.1)

face_removal_mask: Face Removal Mask

Description

Face Removal Mask

Usage

face_removal_mask(file, template = mni_fname(mm = "1"),
  face_mask = mni_face_fname(mm = "1"), outfile = NULL,
  cost = "mutualinfo", retimg = FALSE)
deface_image(file, ...)

Arguments

file

input image

template

Template image to register input image to. Set to NULL (recommended) if want to use from https://github.com/poldracklab/pydeface. Alternatively, use mni_fname.

face_mask

Mask of image, in same space as template. Set to NULL (recommended) if want to use from https://github.com/poldracklab/pydeface. Alternatively, use mni_face_fname.

outfile

Output

cost

Cost function passed to flirt

retimg

(logical) return image of class nifti

...

not used

Value

An image or filename depending on retimg

Examples

# NOT RUN {
if (have_fsl()) {
   file = "~/Downloads/sample_T1_input.nii.gz"
   if (file.exists(file)) {
       mask = face_removal_mask(file = file,
         template = NULL, face_mask = NULL)
       image = fslmask(file, mask)
   }
}
# }