get.fsloutput

<p>Finds the FSLOUTPUTTYPE from system environment or 
<code>getOption("fsl.outputtype")</code> for output type (nii.gz, nii, ANALYZE,etc)</p>

Wrapper functions that interface with 'FSL'
<http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>, a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.

John Muschelli

get.fsloutput: Determine FSL output type

Description

Usage

Arguments

Value