This function calls mcflirt
mcflirt(file, outfile = NULL, retimg = TRUE, reorient = FALSE,
intern = FALSE, opts = "", verbose = TRUE, ...)
(character) image to be manipulated
(character) resultant image name (optional)
(logical) return image of class nifti
(logical) If retimg
, should file be reoriented when read in?
Passed to readnii
.
(logical) to be passed to system
(character) operations to be passed to mcflirt
. Cannot use
-o
or -verbose
, as output file should be specified in outfile
.
(logical) print out command before running
additional arguments passed to readnii
.
If retimg
then object of class nifti. Otherwise,
Result from system command, depends if intern is TRUE or FALSE.