fslr (version 2.24.1)

readrpi: Read NIfTI file reoriented to RPI

Description

This function calls the readnii function after calling rpi_orient_file to force RPI orientation.

Usage

readrpi(file, ..., verbose = TRUE)

Arguments

file

file name of the NIfTI file.

...

Arguments to pass to readnii

verbose

print diagnostics, passed to rpi_orient_file

Examples

# NOT RUN {
if (have.fsl()){
print(fsl_version())
in_ci <- function() {
 nzchar(Sys.getenv("CI"))
 }
 if (in_ci()) {
 destfile = tempfile(fileext = ".nii.gz")
 dl = download.file(paste0("https://github.com/muschellij2/", 
 "Neurohacking/files/3454385/113-01-MPRAGE2.nii.gz"),
 destfile = destfile)
 res = readrpi(destfile)
 }
 }   
# }