fslr (version 2.25.3)

flirt_apply: Apply Warp from FLIRT

Description

This function applies a matrix from flirt to other images

Usage

flirt_apply(
  infile,
  reffile,
  initmat,
  outfile = NULL,
  retimg = TRUE,
  reorient = FALSE,
  intern = FALSE,
  opts = "",
  verbose = TRUE,
  ...
)

Value

character or logical depending on intern

Arguments

infile

(character) input filename

reffile

(character) reference image to be registered to

initmat

(character) Matrix of transformation

outfile

(character) output filename

retimg

(logical) return image of class nifti

reorient

(logical) If retimg, should file be reoriented when read in? Passed to readnii.

intern

(logical) pass to system

opts

(character) additional options to FLIRT

verbose

(logical) print out command before running

...

additional arguments passed to readnii.