This function calls fsl_anat
from FSL
fsl_anat(
file,
modality = c("T1", "T2", "PD"),
outdir = NULL,
intern = FALSE,
opts = "",
verbose = TRUE,
...
)
Result from system command, depends if intern is TRUE or FALSE.
(character) image to be manipulated, should be full path
(character) Modality of Image to be run
(character) output directory, if none specified, will
default to dirname(file)
(logical) to be passed to system
(character) operations to be passed to fsl_anat
(logical) print out command before running
options passed to checkimg