This function applies a coefficient map from fnirt
to other images
fsl_applywarp(
infile,
reffile,
warpfile,
outfile = NULL,
retimg = TRUE,
reorient = FALSE,
intern = FALSE,
opts = "",
verbose = TRUE,
...
)
character or logical depending on intern
(character) input filename
(character) reference image to be registered to
(character) reference image to be registered to
(character) output filename
(logical) return image of class nifti
(logical) If retimg, should file be reoriented when read in?
Passed to readnii
.
(logical) pass to system
(character) additional options to FLIRT
(logical) print out command before running
additional arguments passed to readnii
.