This function calls fslmaths
fsl_maths(..., outfile = tempfile(fileext = ".nii.gz"), retimg = FALSE)fslmaths(
file,
outfile = NULL,
retimg = TRUE,
reorient = FALSE,
intern = FALSE,
opts = "",
verbose = TRUE,
...
)
If retimg
then object of class nifti. Otherwise,
Result from system command, depends if intern is TRUE or FALSE.
additional arguments passed to readnii
.
(character) resultant image name (optional)
(logical) return image of class nifti
(character) image to be manipulated
(logical) If retimg, should file be reoriented when read in?
Passed to readnii
.
(logical) to be passed to system
(character) operations to be passed to fslmaths
(logical) print out command before running