fslmean

Wrapper functions that interface with 'FSL'
<http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>, a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.

John Muschelli

fslr

Wrapper Functions for 'FSL' ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')

fslmean function

<dl><dt>img</dt>
<dd>Object of class nifti, or path of file</dd>
<dt>nonzero</dt>
<dd>(logical) Should the statistic be taken over non-zero voxels</dd>
<dt>verbose</dt>
<dd>(logical) print out command before running</dd>
<dt>ts</dt>
<dd>(logical) is the series a timeseries (4D), invoking <code>-t</code> 
option</dd></dl>

Arguments

Image Mean — fslmean

<dl>

<dt>img</dt>
<dd>Object of class nifti, or path of file</dd>


<dt>nonzero</dt>
<dd>(logical) Should the statistic be taken over non-zero voxels</dd>


<dt>verbose</dt>
<dd>(logical) print out command before running</dd>


<dt>ts</dt>
<dd>(logical) is the series a timeseries (4D), invoking <code>-t</code> 
option</dd>

</dl>

fslmean: Image Mean

Description

Usage

Value

Arguments